J3_5OPT_006
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCAUGAA*UUCUUCACG*CUUUGAG
- Length
- 23 nucleotides
- Bulged bases
- 5OPT|1|E|U|1544, 5OPT|1|E|U|1545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OPT|1|E|C|1372
5OPT|1|E|C|1373
5OPT|1|E|A|1374
5OPT|1|E|U|1375
5OPT|1|E|G|1376
5OPT|1|E|A|1377
5OPT|1|E|A|1378
*
5OPT|1|E|U|1541
5OPT|1|E|U|1542
5OPT|1|E|C|1543
5OPT|1|E|U|1544
5OPT|1|E|U|1545
5OPT|1|E|C|1546
5OPT|1|E|A|1547
5OPT|1|E|C|1548
5OPT|1|E|G|1549
*
5OPT|1|E|C|1556
5OPT|1|E|U|1557
5OPT|1|E|U|1558
5OPT|1|E|U|1559
5OPT|1|E|G|1560
5OPT|1|E|A|1561
5OPT|1|E|G|1562
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain R
- 40S ribosomal protein S13, putative
- Chain S
- 40S ribosomal protein S27, putative
- Chain T
- 40S ribosomal protein S26
- Chain W
- 40S ribosomal protein S3a-2
- Chain e
- 40S ribosomal protein S15a, putative
- Chain f
- 40S ribosomal protein SA
- Chain g
- 40S ribosomal protein S21, putative
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