J3_5OPT_007

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAGAC*GUCUCGUAG*CGAUUACG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|C|1629
5OPT|1|E|A|1630
5OPT|1|E|A|1631
5OPT|1|E|G|1632
5OPT|1|E|A|1633
5OPT|1|E|C|1634
*
5OPT|1|E|G|2113
5OPT|1|E|U|2114
5OPT|1|E|C|2115
5OPT|1|E|U|2116
5OPT|1|E|C|2117
5OPT|1|E|G|2118
5OPT|1|E|U|2119
5OPT|1|E|A|2120
5OPT|1|E|G|2121
*
5OPT|1|E|C|2143
5OPT|1|E|G|2144
5OPT|1|E|A|2145
5OPT|1|E|U|2146
5OPT|1|E|U|2147
5OPT|1|E|A|2148
5OPT|1|E|C|2149
5OPT|1|E|G|2150

Current chains

Chain E

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S5, putative

Chain U

40S ribosomal protein S33, putative

Chain r

40S ribosomal protein S16, putative