J3_5OPT_008

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGUUUAAUUU*GGGGAACUUUAC*GCGACACGCG

Length

33 nucleotides

Bulged bases

5OPT|1|E|G|1667, 5OPT|1|E|G|1669, 5OPT|1|E|A|1671, 5OPT|1|E|G|1977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|C|1645
5OPT|1|E|G|1646
5OPT|1|E|G|1647
5OPT|1|E|U|1648
5OPT|1|E|U|1649
5OPT|1|E|U|1650
5OPT|1|E|A|1651
5OPT|1|E|A|1652
5OPT|1|E|U|1653
5OPT|1|E|U|1654
5OPT|1|E|U|1655
*
5OPT|1|E|G|1666
5OPT|1|E|G|1667
5OPT|1|E|G|1668
5OPT|1|E|G|1669
5OPT|1|E|A|1670
5OPT|1|E|A|1671
5OPT|1|E|C|1672
5OPT|1|E|U|1673
5OPT|1|E|U|1674
5OPT|1|E|U|1675
5OPT|1|E|A|1676
5OPT|1|E|C|1677
*
5OPT|1|E|G|1970
5OPT|1|E|C|1971
5OPT|1|E|G|1972
5OPT|1|E|A|1973
5OPT|1|E|C|1974
5OPT|1|E|A|1975
5OPT|1|E|C|1976
5OPT|1|E|G|1977
5OPT|1|E|C|1978
5OPT|1|E|G|1979

Current chains

Chain E

18S rRNA

Nearby chains

Chain l

Ribosomal protein S20, putative

Chain q

Ribosomal protein S29, putative

Chain t

40S ribosomal protein S15, putative

Chain u

40S ribosomal protein S18, putative