J3_5OPT_009

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUCCGGAC*GAAUG*CUCAAUGUU

Length

22 nucleotides

Bulged bases

5OPT|1|E|G|1685, 5OPT|1|E|A|1960, 5OPT|1|E|U|1962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|A|1681
5OPT|1|E|U|1682
5OPT|1|E|C|1683
5OPT|1|E|C|1684
5OPT|1|E|G|1685
5OPT|1|E|G|1686
5OPT|1|E|A|1687
5OPT|1|E|C|1688
*
5OPT|1|E|G|1731
5OPT|1|E|A|1732
5OPT|1|E|A|1733
5OPT|1|E|U|1734
5OPT|1|E|G|1735
*
5OPT|1|E|C|1957
5OPT|1|E|U|1958
5OPT|1|E|C|1959
5OPT|1|E|A|1960
5OPT|1|E|A|1961
5OPT|1|E|U|1962
5OPT|1|E|G|1963
5OPT|1|E|U|1964
5OPT|1|E|U|1965

Current chains

Chain E

18S rRNA

Nearby chains

Chain j

Ubiquitin/ribosomal protein S27a, putative

Chain n

40S ribosomal protein S10, putative

Chain q

Ribosomal protein S29, putative

Chain t

40S ribosomal protein S15, putative