J3_5OPT_011

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UG*UGUUUG*CGUCAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|U|1761
5OPT|1|E|G|1762
*
5OPT|1|E|U|1771
5OPT|1|E|G|1772
5OPT|1|E|U|1773
5OPT|1|E|U|1774
5OPT|1|E|U|1775
5OPT|1|E|G|1776
*
5OPT|1|E|C|1785
5OPT|1|E|G|1786
5OPT|1|E|U|1787
5OPT|1|E|C|1788
5OPT|1|E|A|1789
5OPT|1|E|A|1790

Current chains

Chain E

18S rRNA

Nearby chains

Chain d

40S ribosomal protein S2, putative

Chain f

40S ribosomal protein SA

Chain k

40S ribosomal protein S17, putative