J3_5OPT_012

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAAGUAAAACCAAUG*CAGUAACACUCAGAAGUG*CAA

Length

38 nucleotides

Bulged bases

5OPT|1|E|G|252, 5OPT|1|E|U|253, 5OPT|1|E|A|281, 5OPT|1|E|A|285, 5OPT|1|E|A|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|U|247
5OPT|1|E|G|248
5OPT|1|E|A|249
5OPT|1|E|A|250
5OPT|1|E|A|251
5OPT|1|E|G|252
5OPT|1|E|U|253
5OPT|1|E|A|254
5OPT|1|E|A|255
5OPT|1|E|A|256
5OPT|1|E|A|257
5OPT|1|E|C|258
5OPT|1|E|C|259
5OPT|1|E|A|260
5OPT|1|E|A|261
5OPT|1|E|U|262
5OPT|1|E|G|263
*
5OPT|1|E|C|274
5OPT|1|E|A|275
5OPT|1|E|G|276
5OPT|1|E|U|277
5OPT|1|E|A|278
5OPT|1|E|A|279
5OPT|1|E|C|280
5OPT|1|E|A|281
5OPT|1|E|C|282
5OPT|1|E|U|283
5OPT|1|E|C|284
5OPT|1|E|A|285
5OPT|1|E|G|286
5OPT|1|E|A|287
5OPT|1|E|A|288
5OPT|1|E|G|289
5OPT|1|E|U|290
5OPT|1|E|G|291
*
5OPT|1|E|C|298
5OPT|1|E|A|299
5OPT|1|E|A|300

Current chains

Chain E

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S4

Chain P

40S ribosomal protein S6

Chain X

40S ribosomal protein S11, putative

Chain h

RNA-binding protein, putative