J3_5OPT_013
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGAA*UGAAGGAG*UCCUCA
- Length
- 18 nucleotides
- Bulged bases
- 5OPT|1|E|G|1198
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OPT|1|E|U|687
5OPT|1|E|G|688
5OPT|1|E|A|689
5OPT|1|E|A|690
*
5OPT|1|E|U|1194
5OPT|1|E|G|1195
5OPT|1|E|A|1196
5OPT|1|E|A|1197
5OPT|1|E|G|1198
5OPT|1|E|G|1199
5OPT|1|E|A|1200
5OPT|1|E|G|1201
*
5OPT|1|E|U|1296
5OPT|1|E|C|1297
5OPT|1|E|C|1298
5OPT|1|E|U|1299
5OPT|1|E|C|1300
5OPT|1|E|A|1301
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S23, putative
- Chain Q
- Ribosomal protein S7, putative
- Chain R
- 40S ribosomal protein S13, putative
- Chain S
- 40S ribosomal protein S27, putative
- Chain X
- 40S ribosomal protein S11, putative
- Chain e
- 40S ribosomal protein S15a, putative
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