J3_5OPT_014

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGACAAG*CCUUUGUGG*CCCUCAACUC

Length

27 nucleotides

Bulged bases

5OPT|1|E|C|1077, 5OPT|1|E|C|1172, 5OPT|1|E|U|1173, 5OPT|1|E|C|1174, 5OPT|1|E|A|1175, 5OPT|1|E|A|1176

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|G|987
5OPT|1|E|U|988
5OPT|1|E|G|989
5OPT|1|E|A|990
5OPT|1|E|C|991
5OPT|1|E|A|992
5OPT|1|E|A|993
5OPT|1|E|G|994
*
5OPT|1|E|C|1076
5OPT|1|E|C|1077
5OPT|1|E|U|1078
5OPT|1|E|U|1079
5OPT|1|E|U|1080
5OPT|1|E|G|1081
5OPT|1|E|U|1082
5OPT|1|E|G|1083
5OPT|1|E|G|1084
*
5OPT|1|E|C|1170
5OPT|1|E|C|1171
5OPT|1|E|C|1172
5OPT|1|E|U|1173
5OPT|1|E|C|1174
5OPT|1|E|A|1175
5OPT|1|E|A|1176
5OPT|1|E|C|1177
5OPT|1|E|U|1178
5OPT|1|E|C|1179

Current chains

Chain E

18S rRNA

Nearby chains

Chain Q

Ribosomal protein S7, putative

Chain S

40S ribosomal protein S27, putative