J3_5OPT_015
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGUUUAAUUU*GGGGAACUUUAC*GCGACACGC
- Length
- 31 nucleotides
- Bulged bases
- 5OPT|1|E|G|1667, 5OPT|1|E|G|1669, 5OPT|1|E|A|1975, 5OPT|1|E|G|1977
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OPT|1|E|G|1646
5OPT|1|E|G|1647
5OPT|1|E|U|1648
5OPT|1|E|U|1649
5OPT|1|E|U|1650
5OPT|1|E|A|1651
5OPT|1|E|A|1652
5OPT|1|E|U|1653
5OPT|1|E|U|1654
5OPT|1|E|U|1655
*
5OPT|1|E|G|1666
5OPT|1|E|G|1667
5OPT|1|E|G|1668
5OPT|1|E|G|1669
5OPT|1|E|A|1670
5OPT|1|E|A|1671
5OPT|1|E|C|1672
5OPT|1|E|U|1673
5OPT|1|E|U|1674
5OPT|1|E|U|1675
5OPT|1|E|A|1676
5OPT|1|E|C|1677
*
5OPT|1|E|G|1970
5OPT|1|E|C|1971
5OPT|1|E|G|1972
5OPT|1|E|A|1973
5OPT|1|E|C|1974
5OPT|1|E|A|1975
5OPT|1|E|C|1976
5OPT|1|E|G|1977
5OPT|1|E|C|1978
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain l
- Ribosomal protein S20, putative
- Chain q
- Ribosomal protein S29, putative
- Chain t
- 40S ribosomal protein S15, putative
- Chain u
- 40S ribosomal protein S18, putative
Coloring options: