J3_5OPT_016
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGC*GGAUUCCU*AAGGUGAGAUUU
- Length
- 23 nucleotides
- Bulged bases
- 5OPT|1|E|U|1929
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OPT|1|E|A|1804
5OPT|1|E|G|1805
5OPT|1|E|C|1806
*
5OPT|1|E|G|1901
5OPT|1|E|G|1902
5OPT|1|E|A|1903
5OPT|1|E|U|1904
5OPT|1|E|U|1905
5OPT|1|E|C|1906
5OPT|1|E|C|1907
5OPT|1|E|U|1908
*
5OPT|1|E|A|1919
5OPT|1|E|A|1920
5OPT|1|E|G|1921
5OPT|1|E|G|1922
5OPT|1|E|U|1923
5OPT|1|E|G|1924
5OPT|1|E|A|1925
5OPT|1|E|G|1926
5OPT|1|E|A|1927
5OPT|1|E|U|1928
5OPT|1|E|U|1929
5OPT|1|E|U|1930
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain O
- 40S ribosomal protein S5, putative
- Chain U
- 40S ribosomal protein S33, putative
- Chain k
- 40S ribosomal protein S17, putative
- Chain l
- Ribosomal protein S20, putative
- Chain p
- Activated protein kinase C receptor, putative
- Chain q
- Ribosomal protein S29, putative
- Chain r
- 40S ribosomal protein S16, putative
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