J3_5OQL_001

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAG

Length

17 nucleotides

Bulged bases

5OQL|1|1|A|943

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OQL|1|1|C|685
5OQL|1|1|A|686
5OQL|1|1|U|687
5OQL|1|1|U|688
5OQL|1|1|A|689
5OQL|1|1|A|690
5OQL|1|1|A|691
5OQL|1|1|U|692
5OQL|1|1|C|693
*
5OQL|1|1|G|891
5OQL|1|1|C|892
5OQL|1|1|C|893
*
5OQL|1|1|G|941
5OQL|1|1|U|942
5OQL|1|1|A|943
5OQL|1|1|A|944
5OQL|1|1|G|968

Current chains

Chain 1

35S rRNA

Nearby chains

Chain m

40S ribosomal protein S4

Chain q

40S ribosomal protein S8

Chain v

40S ribosomal protein S11-like protein