J3_5OQL_003
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCA*UAACAACUG*CAUUC
- Length
- 18 nucleotides
- Bulged bases
- 5OQL|1|1|C|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OQL_003 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1937
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5OQL|1|1|G|1466
5OQL|1|1|U|1467
5OQL|1|1|C|1468
5OQL|1|1|A|1469
*
5OQL|1|1|U|1513
5OQL|1|1|A|1514
5OQL|1|1|A|1515
5OQL|1|1|C|1516
5OQL|1|1|A|1517
5OQL|1|1|A|1518
5OQL|1|1|C|1519
5OQL|1|1|U|1520
5OQL|1|1|G|1521
*
5OQL|1|1|C|1528
5OQL|1|1|A|1529
5OQL|1|1|U|1530
5OQL|1|1|U|1531
5OQL|1|1|C|1532
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain 0
- Faf1
- Chain g
- KRR1 small subunit processome component
- Chain l
- 40S ribosomal protein S1
- Chain s
- 40S ribosomal protein S13-like protein
- Chain t
- 40S ribosomal protein S14-like protein
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