J3_5OQL_004

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUA*UUACG*CAAAA

Length

13 nucleotides

Bulged bases

5OQL|1|1|A|1677

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OQL|1|1|U|1622
5OQL|1|1|U|1623
5OQL|1|1|A|1624
*
5OQL|1|1|U|1663
5OQL|1|1|U|1664
5OQL|1|1|A|1665
5OQL|1|1|C|1666
5OQL|1|1|G|1667
*
5OQL|1|1|C|1674
5OQL|1|1|A|1675
5OQL|1|1|A|1676
5OQL|1|1|A|1677
5OQL|1|1|A|1678

Current chains

Chain 1

35S rRNA

Nearby chains

Chain 0

Faf1

Chain P

Utp24

Chain d

Sof1

Chain w

40S ribosomal protein S22-like protein