J3_5OQL_006

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UGU*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OQL|1|2|C|105
5OQL|1|2|A|110
*
5OQL|1|2|U|198
5OQL|1|2|G|199
5OQL|1|2|U|200
*
5OQL|1|2|G|246
5OQL|1|2|G|247

Current chains

Chain 2

U3 snoRNA

Nearby chains

Chain C

Utp3

Chain T

Putative nucleolar protein

Chain W

Snu13

Chain k

Fcf2