J3_5OQL_008

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGA*UAAUAG*CAUUAA

Length

16 nucleotides

Bulged bases

5OQL|1|1|U|1449

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OQL|1|1|U|1216
5OQL|1|1|U|1217
5OQL|1|1|G|1218
5OQL|1|1|A|1219
*
5OQL|1|1|U|1446
5OQL|1|1|A|1447
5OQL|1|1|A|1448
5OQL|1|1|U|1449
5OQL|1|1|A|1450
5OQL|1|1|G|1451
*
5OQL|1|1|C|1547
5OQL|1|1|A|1548
5OQL|1|1|U|1549
5OQL|1|1|U|1550
5OQL|1|1|A|1551
5OQL|1|1|A|1552

Current chains

Chain 1

35S rRNA

Nearby chains

Chain p

40S ribosomal protein S7-like protein

Chain s

40S ribosomal protein S13-like protein

Chain w

40S ribosomal protein S22-like protein