J3_5OQL_009
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OQL|1|1|C|1745
5OQL|1|1|C|1746
5OQL|1|1|A|1747
5OQL|1|1|G|1748
*
5OQL|1|1|C|2164
5OQL|1|1|U|2165
5OQL|1|1|A|2166
5OQL|1|1|G|2167
5OQL|1|1|U|2168
5OQL|1|1|A|2169
5OQL|1|1|A|2170
*
5OQL|1|1|U|2192
5OQL|1|1|G|2193
5OQL|1|1|A|2194
5OQL|1|1|U|2195
5OQL|1|1|U|2196
5OQL|1|1|A|2197
5OQL|1|1|C|2198
5OQL|1|1|G|2199
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain A
- Periodic tryptophan protein 2-like protein
- Chain b
- Putative U3 small nucleolar ribonucleoprotein
- Chain n
- 40S ribosomal protein s5-like protein
- Chain u
- 40S ribosomal protein S16-like protein
- Chain z
- 40S ribosomal protein S28-like protein
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