J3_5T62_006

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACGG*CCGCUAAGGAGUG*CUCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T62|1|A|G|1230
5T62|1|A|A|1231
5T62|1|A|C|1232
5T62|1|A|G|1233
5T62|1|A|G|1234
*
5T62|1|A|C|1254
5T62|1|A|C|1255
5T62|1|A|G|1256
5T62|1|A|C|1257
5T62|1|A|U|1258
5T62|1|A|A|1259
5T62|1|A|A|1260
5T62|1|A|G|1261
5T62|1|A|G|1262
5T62|1|A|A|1263
5T62|1|A|G|1264
5T62|1|A|U|1265
5T62|1|A|G|1266
*
5T62|1|A|C|1275
5T62|1|A|U|1276
5T62|1|A|C|1277
5T62|1|A|A|1278
5T62|1|A|C|1279

Current chains

Chain A

25S Ribosomal RNA

Nearby chains