J3_5T62_018
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAUGUU*ACGUCAUAGAG*CGUGUG
- Length
- 24 nucleotides
- Bulged bases
- 5T62|1|A|U|190, 5T62|1|A|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T62|1|A|C|185
5T62|1|A|U|186
5T62|1|A|A|187
5T62|1|A|U|188
5T62|1|A|G|189
5T62|1|A|U|190
5T62|1|A|U|191
*
5T62|1|A|A|204
5T62|1|A|C|205
5T62|1|A|G|206
5T62|1|A|U|207
5T62|1|A|C|208
5T62|1|A|A|209
5T62|1|A|U|210
5T62|1|A|A|211
5T62|1|A|G|212
5T62|1|A|A|213
5T62|1|A|G|214
*
5T62|1|A|C|226
5T62|1|A|G|227
5T62|1|A|U|228
5T62|1|A|G|229
5T62|1|A|U|230
5T62|1|A|G|231
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4-A
- Chain l
- 60S ribosomal protein L26-A
Coloring options: