J3_5T62_019
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 5T62|1|A|U|343, 5T62|1|A|A|351, 5T62|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T62_019 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0727
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5T62|1|A|C|340
5T62|1|A|G|341
5T62|1|A|A|342
5T62|1|A|U|343
5T62|1|A|A|344
5T62|1|A|G|345
5T62|1|A|C|346
5T62|1|A|G|347
5T62|1|A|A|348
5T62|1|A|A|349
5T62|1|A|C|350
5T62|1|A|A|351
5T62|1|A|A|352
5T62|1|A|G|353
5T62|1|A|U|354
5T62|1|A|A|355
5T62|1|A|C|356
*
5T62|1|A|G|363
5T62|1|A|G|364
5T62|1|A|A|365
5T62|1|A|A|366
5T62|1|A|A|367
5T62|1|A|G|368
*
5T62|1|C|C|21
5T62|1|C|U|22
5T62|1|C|U|23
5T62|1|C|G|24
Current chains
- Chain A
- 25S Ribosomal RNA
- Chain C
- 5.8S Ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain l
- 60S ribosomal protein L26-A
- Chain w
- 60S ribosomal protein L37-A
- Chain y
- 60S ribosomal protein L39
Coloring options: