J3_5T6R_015
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CCAUAU*AGC*GUG
- Length
- 12 nucleotides
- Bulged bases
- 5T6R|1|B|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T6R|1|B|C|9
5T6R|1|B|C|10
5T6R|1|B|A|11
5T6R|1|B|U|12
5T6R|1|B|A|13
5T6R|1|B|U|14
*
5T6R|1|B|A|66
5T6R|1|B|G|67
5T6R|1|B|C|68
*
5T6R|1|B|G|110
5T6R|1|B|U|111
5T6R|1|B|G|112
Current chains
- Chain B
- 5S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 60S ribosomal protein L5
- Chain L
- 60S ribosomal protein L10
- Chain g
- 60S ribosomal protein L21-A
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