J3_5T6R_016
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAGAG*UUCGAAG
- Length
- 30 nucleotides
- Bulged bases
- 5T6R|1|A|U|117, 5T6R|1|A|G|120, 5T6R|1|A|A|121, 5T6R|1|A|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T6R|1|A|C|113
5T6R|1|A|A|114
5T6R|1|A|A|115
5T6R|1|A|A|116
5T6R|1|A|U|117
5T6R|1|A|U|118
5T6R|1|A|U|119
5T6R|1|A|G|120
5T6R|1|A|A|121
5T6R|1|A|A|122
5T6R|1|A|A|123
*
5T6R|1|A|U|149
5T6R|1|A|A|150
5T6R|1|A|A|151
5T6R|1|A|U|152
5T6R|1|A|U|153
5T6R|1|A|U|154
5T6R|1|A|G|155
5T6R|1|A|G|156
5T6R|1|A|A|157
5T6R|1|A|G|158
5T6R|1|A|A|159
5T6R|1|A|G|160
*
5T6R|1|A|U|261
5T6R|1|A|U|262
5T6R|1|A|C|263
5T6R|1|A|G|264
5T6R|1|A|A|265
5T6R|1|A|A|266
5T6R|1|A|G|267
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain J
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L15-A
- Chain u
- 60S ribosomal protein L35-A
- Chain v
- 60S ribosomal protein L36-A
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