J3_5TBW_005

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

5TBW|1|1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5TBW|1|1|A|828
5TBW|1|1|U|829
5TBW|1|1|A|830
5TBW|1|1|G|831
*
5TBW|1|1|C|863
5TBW|1|1|G|864
5TBW|1|1|U|865
5TBW|1|1|A|866
5TBW|1|1|G|867
*
5TBW|1|1|U|892
5TBW|1|1|C|893
5TBW|1|1|G|894
5TBW|1|1|A|895
5TBW|1|1|A|896
5TBW|1|1|U|897

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L34-A

Chain AQ

60S ribosomal protein L43-A

Chain j

60S ribosomal protein L2-A

Chain z

60S ribosomal protein L19-A