J3_5TBW_010

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGAUC*GGAAU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70383.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

5TBW|1|1|U|1526
5TBW|1|1|C|1527
5TBW|1|1|G|1528
5TBW|1|1|A|1529
5TBW|1|1|U|1530
5TBW|1|1|C|1531
*
5TBW|1|1|G|1591
5TBW|1|1|G|1592
5TBW|1|1|A|1593
5TBW|1|1|A|1594
5TBW|1|1|U|1595
*
5TBW|1|1|A|1612
5TBW|1|1|A|1613

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

60S ribosomal protein L25

Chain AH

60S ribosomal protein L34-A

Chain AL

60S ribosomal protein L38

Chain AM

60S ribosomal protein L39