J3_5TBW_011

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAC*GUAACU*AG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25670.1

Basepair signature

cWW-F-F-F-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5TBW|1|1|C|1631
5TBW|1|1|A|1632
5TBW|1|1|C|1633
*
5TBW|1|1|G|1640
5TBW|1|1|U|1641
5TBW|1|1|A|1642
5TBW|1|1|A|1643
5TBW|1|1|C|1644
5TBW|1|1|U|1645
*
5TBW|1|1|A|1810
5TBW|1|1|G|1811

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L27-A

Chain AH

60S ribosomal protein L34-A