J3_5TGM_013

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAUC*GUUG*CACUAAUAG

Length

18 nucleotides

Bulged bases

5TGM|1|1|A|2887, 5TGM|1|1|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|1|C|2885
5TGM|1|1|U|2886
5TGM|1|1|A|2887
5TGM|1|1|U|2888
5TGM|1|1|C|2889
*
5TGM|1|1|G|2914
5TGM|1|1|U|2915
5TGM|1|1|U|2916
5TGM|1|1|G|2917
*
5TGM|1|1|C|2929
5TGM|1|1|A|2930
5TGM|1|1|C|2931
5TGM|1|1|U|2932
5TGM|1|1|A|2933
5TGM|1|1|A|2934
5TGM|1|1|U|2935
5TGM|1|1|A|2936
5TGM|1|1|G|2937

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain M6

60S ribosomal protein L16-A

Chain N3

60S ribosomal protein L23-A