J3_5TGM_018
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5TGM|1|2|C|917
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TGM_018 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0942
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5TGM|1|2|A|864
5TGM|1|2|U|865
5TGM|1|2|C|866
5TGM|1|2|A|867
*
5TGM|1|2|U|911
5TGM|1|2|A|912
5TGM|1|2|A|913
5TGM|1|2|C|914
5TGM|1|2|U|915
5TGM|1|2|A|916
5TGM|1|2|C|917
5TGM|1|2|U|918
5TGM|1|2|G|919
*
5TGM|1|2|C|926
5TGM|1|2|A|927
5TGM|1|2|U|928
5TGM|1|2|U|929
5TGM|1|2|U|930
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S13
- Chain C4
- 40S ribosomal protein S14-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain Q3
- 60S ribosomal protein L43-A
- Chain S1
- 40S ribosomal protein S1-A
Coloring options: