J3_5TGM_022
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 5TGM|1|2|G|1182, 5TGM|1|2|G|1184, 5TGM|1|2|A|1186
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TGM_022 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0845
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5TGM|1|2|C|1163
5TGM|1|2|U|1164
5TGM|1|2|U|1165
5TGM|1|2|A|1166
5TGM|1|2|A|1167
5TGM|1|2|U|1168
5TGM|1|2|U|1169
5TGM|1|2|U|1170
*
5TGM|1|2|G|1181
5TGM|1|2|G|1182
5TGM|1|2|G|1183
5TGM|1|2|G|1184
5TGM|1|2|A|1185
5TGM|1|2|A|1186
5TGM|1|2|A|1187
5TGM|1|2|C|1188
5TGM|1|2|U|1189
5TGM|1|2|C|1190
5TGM|1|2|A|1191
5TGM|1|2|C|1192
*
5TGM|1|2|G|1437
5TGM|1|2|G|1438
5TGM|1|2|C|1439
5TGM|1|2|C|1440
5TGM|1|2|G|1441
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C5
- 40S Ribosomal Protein S15,40S ribosomal protein S15,40S Ribosomal Protein S15
- Chain C8
- 40S ribosomal protein S18-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain E1
- Ubiquitin-40S ribosomal protein S31
- Chain SM
- Ribosome-bound protein Stm1,Suppressor protein STM1,Ribosome-bound protein Stm1
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