J3_5TGM_073

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5TGM|1|2|A|217, 5TGM|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|A|213
5TGM|1|2|G|214
5TGM|1|2|A|215
5TGM|1|2|U|216
5TGM|1|2|A|217
5TGM|1|2|A|218
5TGM|1|2|A|219
5TGM|1|2|A|220
5TGM|1|2|A|221
5TGM|1|2|A|222
5TGM|1|2|U|223
5TGM|1|2|C|224
5TGM|1|2|A|225
5TGM|1|2|A|226
5TGM|1|2|U|227
5TGM|1|2|G|228
*
5TGM|1|2|C|237
5TGM|1|2|U|238
5TGM|1|2|C|239
5TGM|1|2|U|240
5TGM|1|2|U|241
5TGM|1|2|U|242
5TGM|1|2|G|243
*
5TGM|1|2|C|250
5TGM|1|2|A|251
5TGM|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S Ribosomal Protein S11

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8