J3_5TGM_075
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 5TGM|1|2|U|1373, 5TGM|1|2|U|1396, 5TGM|1|2|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TGM_075 not in the Motif Atlas
- Homologous match to J3_8P9A_083
- Geometric discrepancy: 0.1409
- The information below is about J3_8P9A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5TGM|1|2|A|1319
5TGM|1|2|A|1320
5TGM|1|2|C|1321
*
5TGM|1|2|G|1369
5TGM|1|2|G|1370
5TGM|1|2|A|1371
5TGM|1|2|C|1372
5TGM|1|2|U|1373
5TGM|1|2|A|1374
*
5TGM|1|2|U|1390
5TGM|1|2|G|1391
5TGM|1|2|G|1392
5TGM|1|2|A|1393
5TGM|1|2|A|1394
5TGM|1|2|G|1395
5TGM|1|2|U|1396
5TGM|1|2|U|1397
5TGM|1|2|U|1398
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C7
- ES17
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain S5
- 40S ribosomal protein S5
- Chain SR
- Guanine nucleotide-binding protein subunit beta-like protein
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