J3_5TGM_094
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 5TGM|1|2|U|847
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TGM_094 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1021
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5TGM|1|2|U|633
5TGM|1|2|G|634
5TGM|1|2|A|635
*
5TGM|1|2|U|844
5TGM|1|2|A|845
5TGM|1|2|A|846
5TGM|1|2|U|847
5TGM|1|2|A|848
5TGM|1|2|G|849
*
5TGM|1|2|C|945
5TGM|1|2|A|946
5TGM|1|2|U|947
5TGM|1|2|U|948
5TGM|1|2|A|949
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A,40S Ribosomal Protein S11
- Chain C3
- 40S ribosomal protein S13
- Chain D2
- 40S ribosomal protein S22-A
- Chain D3
- 40S ribosomal protein S23-A
- Chain D7
- 40S ribosomal protein S27-A
- Chain S7
- 40S ribosomal protein S7-A
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