J3_5U9F_003
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 5U9F|1|01|U|686, 5U9F|1|01|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5U9F_003 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.1087
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5U9F|1|01|U|683
5U9F|1|01|G|684
5U9F|1|01|A|685
5U9F|1|01|U|686
5U9F|1|01|C|687
5U9F|1|01|U|688
5U9F|1|01|A|689
*
5U9F|1|01|U|773
5U9F|1|01|G|774
5U9F|1|01|G|775
*
5U9F|1|01|C|791
5U9F|1|01|A|792
5U9F|1|01|A|793
5U9F|1|01|A|794
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 04
- 50S ribosomal protein L2
- Chain 32
- 50S ribosomal protein L34
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