J3_5U9F_008
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCGACC*GAAA*UA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5U9F_008 not in the Motif Atlas
- Homologous match to J3_5J7L_043
- Geometric discrepancy: 0.1549
- The information below is about J3_5J7L_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92705.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5U9F|1|01|U|1344
5U9F|1|01|C|1345
5U9F|1|01|G|1346
5U9F|1|01|A|1347
5U9F|1|01|C|1348
5U9F|1|01|C|1349
*
5U9F|1|01|G|1382
5U9F|1|01|A|1383
5U9F|1|01|A|1384
5U9F|1|01|A|1385
*
5U9F|1|01|U|1402
5U9F|1|01|A|1403
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 22
- 50S ribosomal protein L23
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