J3_5U9F_011

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5U9F|1|01|A|2518, 5U9F|1|01|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5U9F_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1655

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5U9F|1|01|C|2517
5U9F|1|01|A|2518
5U9F|1|01|U|2519
5U9F|1|01|C|2520
*
5U9F|1|01|G|2545
5U9F|1|01|U|2546
5U9F|1|01|A|2547
*
5U9F|1|01|U|2561
5U9F|1|01|U|2562
5U9F|1|01|U|2563
5U9F|1|01|A|2564
5U9F|1|01|A|2565
5U9F|1|01|A|2566
5U9F|1|01|G|2567

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 13

50S ribosomal protein L14