3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
5U9F|1|01|U|321, 5U9F|1|01|C|323
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5U9F_029 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.1586
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

5U9F|1|01|G|297
5U9F|1|01|G|298
5U9F|1|01|A|299
5U9F|1|01|A|300
5U9F|1|01|G|301
*
5U9F|1|01|C|316
5U9F|1|01|G|317
5U9F|1|01|C|318
5U9F|1|01|G|319
5U9F|1|01|A|320
5U9F|1|01|U|321
5U9F|1|01|A|322
5U9F|1|01|C|323
5U9F|1|01|A|324
5U9F|1|01|G|325
*
5U9F|1|01|C|337
5U9F|1|01|G|338
5U9F|1|01|U|339
5U9F|1|01|A|340
5U9F|1|01|C|341

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 06
50S ribosomal protein L4
Chain 23
50S ribosomal protein L24

Coloring options:


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