J3_5UQ7_008

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

5UQ7|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UQ7_008 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1166

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5UQ7|1|A|C|1306
5UQ7|1|A|A|1307
5UQ7|1|A|A|1308
5UQ7|1|A|G|1309
*
5UQ7|1|A|C|1605
5UQ7|1|A|G|1606
5UQ7|1|A|C|1607
5UQ7|1|A|A|1608
5UQ7|1|A|A|1609
5UQ7|1|A|A|1610
5UQ7|1|A|C|1611
*
5UQ7|1|A|G|1620
5UQ7|1|A|U|1621
5UQ7|1|A|G|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34