J3_5UYK_004

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYK_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0851

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5UYK|1|01|C|698
5UYK|1|01|A|699
5UYK|1|01|G|700
*
5UYK|1|01|C|732
5UYK|1|01|G|733
5UYK|1|01|A|734
5UYK|1|01|A|735
5UYK|1|01|C|736
*
5UYK|1|01|G|760
5UYK|1|01|A|761
5UYK|1|01|U|762
5UYK|1|01|G|763

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2