J3_5UYL_014
3D structure
- PDB id
- 5UYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 5UYL|1|02|G|13, 5UYL|1|02|U|14, 5UYL|1|02|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UYL_014 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.257
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5UYL|1|02|G|10
5UYL|1|02|C|11
5UYL|1|02|C|12
5UYL|1|02|G|13
5UYL|1|02|U|14
5UYL|1|02|A|15
5UYL|1|02|G|16
*
5UYL|1|02|C|68
5UYL|1|02|G|69
5UYL|1|02|C|70
*
5UYL|1|02|G|106
5UYL|1|02|G|107
5UYL|1|02|A|108
5UYL|1|02|A|109
5UYL|1|02|C|110
Current chains
- Chain 02
- 5S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 17
- 50S ribosomal protein L18
- Chain 24
- 50S ribosomal protein L25
- Chain 25
- 50S ribosomal protein L27
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