J3_5UYL_030
3D structure
- PDB id
- 5UYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 5UYL|1|01|U|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UYL_030 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.1638
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5UYL|1|01|G|297
5UYL|1|01|G|298
5UYL|1|01|A|299
5UYL|1|01|A|300
5UYL|1|01|G|301
*
5UYL|1|01|C|316
5UYL|1|01|G|317
5UYL|1|01|C|318
5UYL|1|01|G|319
5UYL|1|01|A|320
5UYL|1|01|U|321
5UYL|1|01|A|322
5UYL|1|01|C|323
5UYL|1|01|A|324
5UYL|1|01|G|325
*
5UYL|1|01|C|337
5UYL|1|01|G|338
5UYL|1|01|U|339
5UYL|1|01|A|340
5UYL|1|01|C|341
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 06
- 50S ribosomal protein L4
- Chain 23
- 50S ribosomal protein L24
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