J3_5UYM_029

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5UYM|1|01|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYM_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1451

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5UYM|1|01|G|297
5UYM|1|01|G|298
5UYM|1|01|A|299
5UYM|1|01|A|300
5UYM|1|01|G|301
*
5UYM|1|01|C|316
5UYM|1|01|G|317
5UYM|1|01|C|318
5UYM|1|01|G|319
5UYM|1|01|A|320
5UYM|1|01|U|321
5UYM|1|01|A|322
5UYM|1|01|C|323
5UYM|1|01|A|324
5UYM|1|01|G|325
*
5UYM|1|01|C|337
5UYM|1|01|G|338
5UYM|1|01|U|339
5UYM|1|01|A|340
5UYM|1|01|C|341

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 23

50S ribosomal protein L24