J3_5UYP_030

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5UYP|1|01|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYP_030 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1469

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5UYP|1|01|G|297
5UYP|1|01|G|298
5UYP|1|01|A|299
5UYP|1|01|A|300
5UYP|1|01|G|301
*
5UYP|1|01|C|316
5UYP|1|01|G|317
5UYP|1|01|C|318
5UYP|1|01|G|319
5UYP|1|01|A|320
5UYP|1|01|U|321
5UYP|1|01|A|322
5UYP|1|01|C|323
5UYP|1|01|A|324
5UYP|1|01|G|325
*
5UYP|1|01|C|337
5UYP|1|01|G|338
5UYP|1|01|U|339
5UYP|1|01|A|340
5UYP|1|01|C|341

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 23

50S ribosomal protein L24