J3_5UYQ_003

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5UYQ|1|01|U|686, 5UYQ|1|01|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYQ_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1238

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5UYQ|1|01|U|683
5UYQ|1|01|G|684
5UYQ|1|01|A|685
5UYQ|1|01|U|686
5UYQ|1|01|C|687
5UYQ|1|01|U|688
5UYQ|1|01|A|689
*
5UYQ|1|01|U|773
5UYQ|1|01|G|774
5UYQ|1|01|G|775
*
5UYQ|1|01|C|791
5UYQ|1|01|A|792
5UYQ|1|01|A|793
5UYQ|1|01|A|794

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain 32

50S ribosomal protein L34