J3_5V3I_004

3D structure

PDB id

5V3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - wild-type C634

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GUCGCAAUC*GUAG*CGAGAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V3I|1|A|G|608
5V3I|1|A|U|609
5V3I|1|A|C|610
5V3I|1|A|G|611
5V3I|1|A|C|612
5V3I|1|A|A|613
5V3I|1|A|A|614
5V3I|1|A|U|615
5V3I|1|A|C|616
*
5V3I|1|A|G|643
5V3I|1|A|U|644
5V3I|1|A|A|645
5V3I|1|A|G|646
*
5V3I|1|A|C|772
5V3I|1|A|G|773
5V3I|1|A|A|774
5V3I|1|A|G|775
5V3I|1|A|A|776
5V3I|1|A|U|777

Current chains

Chain A

VS Ribozyme RNA

Nearby chains