J3_5V8I_005

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V8I_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0661

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5V8I|1|1A|C|698
5V8I|1|1A|A|699
5V8I|1|1A|G|700
*
5V8I|1|1A|C|732
5V8I|1|1A|G|733
5V8I|1|1A|A|734
5V8I|1|1A|A|735
5V8I|1|1A|C|736
*
5V8I|1|1A|G|760
5V8I|1|1A|A|761
5V8I|1|1A|U|762
5V8I|1|1A|G|763

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2