J3_5V8I_030

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

5V8I|1|2A|U|272|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V8I_030 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.0819

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5V8I|1|2A|U|269
5V8I|1|2A|A|270
5V8I|1|2A|A|271
5V8I|1|2A|A|271|||A
5V8I|1|2A|C|271|||B
*
5V8I|1|2A|G|271|||V
5V8I|1|2A|G|271|||W
5V8I|1|2A|G|271|||X
5V8I|1|2A|U|271|||Y
5V8I|1|2A|C|271|||Z
5V8I|1|2A|G|272
5V8I|1|2A|U|272|||A
5V8I|1|2A|G|272|||B
*
5V8I|1|2A|C|366
5V8I|1|2A|G|370

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2I

50S ribosomal protein L9