J3_5V8I_050

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAAC*GGUGCCC*GGGAGCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|2a|G|1002
5V8I|1|2a|G|1003
5V8I|1|2a|A|1004
5V8I|1|2a|A|1005
5V8I|1|2a|C|1006
*
5V8I|1|2a|G|1023
5V8I|1|2a|G|1024
5V8I|1|2a|U|1025
5V8I|1|2a|G|1026
5V8I|1|2a|C|1027
5V8I|1|2a|C|1028
5V8I|1|2a|C|1029
*
5V8I|1|2a|G|1032
5V8I|1|2a|G|1033
5V8I|1|2a|G|1034
5V8I|1|2a|A|1035
5V8I|1|2a|G|1036
5V8I|1|2a|C|1037
5V8I|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains