J3_5V93_014
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GCCACAG*CGC*GACAC
- Length
- 15 nucleotides
- Bulged bases
- 5V93|1|B|C|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5V93_014 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.2165
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5V93|1|B|G|9
5V93|1|B|C|10
5V93|1|B|C|11
5V93|1|B|A|12
5V93|1|B|C|13
5V93|1|B|A|14
5V93|1|B|G|15
*
5V93|1|B|C|67
5V93|1|B|G|68
5V93|1|B|C|69
*
5V93|1|B|G|102
5V93|1|B|A|103
5V93|1|B|C|104
5V93|1|B|A|105
5V93|1|B|C|106
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
Coloring options: