J3_5V93_021

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_021 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.2383

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5V93|1|a|U|983
5V93|1|a|U|984
5V93|1|a|U|985
5V93|1|a|G|986
*
5V93|1|a|C|1036
5V93|1|a|A|1037
5V93|1|a|G|1038
*
5V93|1|a|C|1202
5V93|1|a|U|1203
5V93|1|a|U|1204
5V93|1|a|A|1205
5V93|1|a|U|1206
5V93|1|a|G|1207

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z