J3_5V93_031

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAAG*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

5V93|1|A|U|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_031 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1788

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5V93|1|A|G|379
5V93|1|A|G|380
5V93|1|A|A|381
5V93|1|A|A|382
5V93|1|A|G|383
*
5V93|1|A|U|399
5V93|1|A|G|400
5V93|1|A|C|401
5V93|1|A|C|402
5V93|1|A|G|403
5V93|1|A|U|404
5V93|1|A|A|405
5V93|1|A|G|406
5V93|1|A|A|407
5V93|1|A|C|408
*
5V93|1|A|G|420
5V93|1|A|G|421
5V93|1|A|U|422
5V93|1|A|A|423
5V93|1|A|C|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24