J3_5V93_037

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAUUG*CUAAC*GGACAGUG

Length

18 nucleotides

Bulged bases

5V93|1|A|A|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|A|U|2326
5V93|1|A|A|2327
5V93|1|A|U|2328
5V93|1|A|U|2329
5V93|1|A|G|2330
*
5V93|1|A|C|2433
5V93|1|A|U|2434
5V93|1|A|A|2435
5V93|1|A|A|2436
5V93|1|A|C|2437
*
5V93|1|A|G|2461
5V93|1|A|G|2462
5V93|1|A|A|2463
5V93|1|A|C|2464
5V93|1|A|A|2465
5V93|1|A|G|2466
5V93|1|A|U|2467
5V93|1|A|G|2468

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28