J3_5V93_038
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUCAA*UGGCGAG*CACAAG
- Length
- 18 nucleotides
- Bulged bases
- 5V93|1|A|G|2557, 5V93|1|A|C|2572, 5V93|1|A|A|2574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5V93_038 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.4392
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5V93|1|A|C|2533
5V93|1|A|U|2534
5V93|1|A|C|2535
5V93|1|A|A|2536
5V93|1|A|A|2537
*
5V93|1|A|U|2555
5V93|1|A|G|2556
5V93|1|A|G|2557
5V93|1|A|C|2558
5V93|1|A|G|2559
5V93|1|A|A|2560
5V93|1|A|G|2561
*
5V93|1|A|C|2570
5V93|1|A|A|2571
5V93|1|A|C|2572
5V93|1|A|A|2573
5V93|1|A|A|2574
5V93|1|A|G|2575
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
Coloring options: